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bridging the micro-macro gap with diffusion MRI
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Jelle Veraart
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2019
J. Veraart
,
Fieremans, E.
, and
Novikov, D. S.
,
“
On the scaling behavior of water diffusion in human brain white matter.
”
,
Neuroimage
, vol. 185, pp. 379–387, 2019.
2018
G. Lemberskiy
,
Fieremans, E.
,
Veraart, J.
,
Deng, F. - M.
,
Rosenkrantz, A. B.
, and
Novikov, D. S.
,
“
Characterization of prostate microstructure using water diffusion and NMR relaxation.
”
,
Front Phys
, vol. 6, 2018.
B. M. Adhikari
,
Jahanshad, N.
,
Shukla, D.
,
Glahn, D. C.
,
Blangero, J.
,
Fox, P. T.
,
Reynolds, R. C.
,
Cox, R. W.
,
Fieremans, E.
,
Veraart, J.
,
Novikov, D. S.
,
Nichols, T. E.
,
L Hong, E.
,
Thompson, P. M.
, and
Kochunov, P.
,
“
Comparison of heritability estimates on resting state fMRI connectivity phenotypes using the ENIGMA analysis pipeline.
”
,
Hum Brain Mapp
, vol. 39, pp. 4893–4902, 2018.
B. Ades-Aron
,
Veraart, J.
,
Kochunov, P.
,
McGuire, S.
,
Sherman, P.
,
Kellner, E.
,
Novikov, D. S.
, and
Fieremans, E.
,
“
Evaluation of the accuracy and precision of the diffusion parameter EStImation with Gibbs and NoisE removal pipeline
”
,
NeuroImage
, vol. 183, pp. 532 - 543, 2018.
B. M. Adhikari
,
Jahanshad, N.
,
Shukla, D.
,
Glahn, D. C.
,
Blangero, J.
,
Reynolds, R. C.
,
Cox, R. W.
,
Fieremans, E.
,
Veraart, J.
,
Novikov, D. S.
,
Nichols, T. E.
,
L Hong, E.
,
Thompson, P. M.
, and
Kochunov, P.
,
“
Heritability estimates on resting state fMRI data using ENIGMA analysis pipeline.
”
,
Pac Symp Biocomput
, vol. 23, pp. 307–318, 2018.
P. Kochunov
,
Dickie, E. W.
,
Viviano, J. D.
,
Turner, J.
,
Kingsley, P. B.
,
Jahanshad, N.
,
Thompson, P. M.
,
Ryan, M. C.
,
Fieremans, E.
,
Novikov, D. S.
,
Veraart, J.
,
Hong, E. L.
,
Malhotra, A. K.
,
Buchanan, R. W.
,
Chavez, S.
, and
Voineskos, A. N.
,
“
Integration of routine QA data into mega-analysis may improve quality and sensitivity of multisite diffusion tensor imaging studies.
”
,
Hum Brain Mapp
, vol. 39, pp. 1015–1023, 2018.
M. C. Ryan
,
Sherman, P.
,
Rowland, L. M.
,
S. Wijtenburg, A.
,
Acheson, A.
,
Fieremans, E.
,
Veraart, J.
,
Novikov, D. S.
,
L. Hong, E.
,
Sladky, J.
,
P. Peralta, D.
,
Kochunov, P.
, and
McGuire, S. A.
,
“
Miniature pig model of human adolescent brain white matter development
”
, vol. 296, pp. 99 - 108, 2018.
B. M. Adhikari
,
Jahanshad, N.
,
Shukla, D.
,
Turner, J.
,
Grotegerd, D.
,
Dannlowski, U.
,
Kugel, H.
,
Engelen, J.
,
Dietsche, B.
,
Krug, A.
,
Kircher, T.
,
Fieremans, E.
,
Veraart, J.
,
Novikov, D. S.
,
Boedhoe, P. S. W.
,
van der Werf, Y. D.
,
van den Heuvel, O. A.
,
Ipser, J.
,
Uhlmann, A.
,
Stein, D. J.
,
Dickie, E.
,
Voineskos, A. N.
,
Malhotra, A. K.
,
Pizzagalli, F.
,
Calhoun, V. D.
,
Waller, L.
,
Veer, I. M.
,
Walter, H.
,
Buchanan, R. W.
,
Glahn, D. C.
,
L Hong, E.
,
Thompson, P. M.
, and
Kochunov, P.
,
“
A resting state fMRI analysis pipeline for pooling inference across diverse cohorts: an ENIGMA rs-fMRI protocol.
”
,
Brain Imaging Behav
, 2018.
D. S. Novikov
,
Veraart, J.
,
Jelescu, I. O.
, and
Fieremans, E.
,
“
Rotationally-invariant mapping of scalar and orientational metrics of neuronal microstructure with diffusion MRI.
”
,
Neuroimage
, vol. 174, pp. 518–538, 2018.
J. Veraart
,
Novikov, D. S.
, and
Fieremans, E.
,
“
TE dependent Diffusion Imaging (TEdDI) distinguishes between compartmental T2 relaxation times.
”
,
Neuroimage
, vol. 182, pp. 360–369, 2018.
2017
M. Ryan
,
Kochunov, P.
,
Rowland, L. M.
,
Mitchell, B. D.
,
S. Wijtenburg, A.
,
Fieremans, E.
,
Veraart, J.
,
Novikov, D. S.
,
Du, X.
,
Adhikari, B.
,
Fisseha, F.
,
Bruce, H.
,
Chiappelli, J.
,
Sampath, H.
,
Ament, S.
,
O'Connell, J.
,
Shuldiner, A. R.
, and
L. Hong, E.
,
“
Lipid Metabolism, Abdominal Adiposity, and Cerebral Health in the Amish
”
,
Obesity
, p. n/a–n/a, 2017.
G. Lemberskiy
,
Rosenkrantz, A.
,
Veraart, J.
,
Taneja, S. S.
,
Novikov, D. S.
, and
Fieremans, E.
,
“
Time-Dependent Diffusion in Prostate Cancer
”
,
Investigative Radiology
, p. 1, 2017.
2016
J. Veraart
,
Novikov, D. S.
,
Christiaens, D.
,
Ades-Aron, B.
,
Sijbers, J.
, and
Fieremans, E.
,
“
Denoising of diffusion \{MRI\} using random matrix theory
”
,
NeuroImage
, vol. 142, pp. 394 - 406, 2016.
P. Kochunov
,
Rowland, L. M.
,
Fieremans, E.
,
Veraart, J.
,
Jahanshad, N.
,
Eskandar, G.
,
Du, X.
,
Muellerklein, F.
,
Savransky, A.
,
Shukla, D.
,
Sampath, H.
,
Thompson, P. M.
, and
L. Hong, E.
,
“
Diffusion-weighted imaging uncovers likely sources of processing-speed deficits in schizophrenia
”
,
Proceedings of the National Academy of Sciences
, vol. 113, pp. 13504-13509, 2016.
E. Fieremans
,
Lemberskiy, G.
,
Veraart, J.
,
Sigmund, E. E.
,
Gyftopoulos, S.
, and
Novikov, D. S.
,
“
In vivo measurement of membrane permeability and myofiber size in human muscle using time-dependent diffusion tensor imaging and the random permeable barrier model.
”
,
NMR Biomed
, 2016.
E. Fieremans
,
Burcaw, L. M.
,
Lee, H. - H.
,
Lemberskiy, G.
,
Veraart, J.
, and
Novikov, D. S.
,
“
In vivo observation and biophysical interpretation of time-dependent diffusion in human white matter.
”
,
Neuroimage
, vol. 129, pp. 414-427, 2016.
I. O. Jelescu
,
Zurek, M.
,
Winters, K. V.
,
Veraart, J.
,
Rajaratnam, A.
,
Kim, N. S.
,
Babb, J. S.
,
Shepherd, T. M.
,
Novikov, D. S.
,
Kim, S. G.
, and
Fieremans, E.
,
“
In vivo quantification of demyelination and recovery using compartment-specific diffusion MRI metrics validated by electron microscopy.
”
,
Neuroimage
, vol. 132, 2016.
2015
I. O. Jelescu
,
Veraart, J.
,
Fieremans, E.
, and
Novikov, D. S.
,
“
Degeneracy in model parameter estimation for multi-compartmental diffusion in neuronal tissue
”
,
NMR in biomedicine
, pp. 33-47, 2015.
C. Guglielmetti
,
Veraart, J.
,
Roelant, E.
,
Mai, Z.
,
Daans, J.
,
Van Audekerke, J.
,
Naeyaert, M.
,
Vanhoutte, G.
,
Delgado Y Palacios, R.
,
Praet, J.
,
Fieremans, E.
,
Ponsaerts, P.
,
Sijbers, J.
,
Van der Linden, A.
, and
Verhoye, M.
,
“
Diffusion kurtosis imaging probes cortical alterations and white matter pathology following cuprizone induced demyelination and spontaneous remyelination
”
,
Neuroimage
, vol. 125, pp. 363-377, 2015.
J. Veraart
,
Fieremans, E.
, and
Novikov, D. S.
,
“
Diffusion MRI noise mapping using random matrix theory
”
,
Magnetic resonance in medicine
, p. ?-?, 2015.
J. Veraart
,
Fieremans, E.
,
Jelescu, I. O.
,
Knoll, F.
, and
Novikov, D. S.
,
“
Gibbs ringing in diffusion MRI
”
,
Magnetic resonance in medicine
, p. ?-?, 2015.
2014
I. O. Jelescu
,
Veraart, J.
,
Adisetiyo, V.
,
Milla, S.
,
Novikov, D. S.
, and
Fieremans, E.
,
“
One diffusion acquisition and different white matter models: How does microstructure change in human early development based on WMTI and NODDI?
”
,
Neuroimage
, vol. 107, pp. 242-256, 2014.